UNITY
®
Manual
General Information
UNITY Index
Introduction
What's New
License Requirements
Access UNITY
View or Print the UNITY User Guide
Introduced in 1995
Revised for SYBYL 8.0 (Late 2007)
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Tutorials
Configuring UNITY for Searching
Database Building Examples
Basic 2D Searching Tutorial
Define Queries for Different Searches Tutorial
Qualified Atoms and List Markushes Tutorial
Bond Path Constraint Tutorial
Create Macro Features Tutorial
Receptor Site Searching Tutorial
Post-processing Hits Tutorial
Using Spatial and Partial Match Constraints Tutorial
Speed up UNITY 3D/Flexible Searches Tutorial
Using SiteID and the UNITY Surface Volume Constraint
(in the SiteID Manual)
Server Access
Configure UNITY (syb3dbserver) to Search
syb3dbserver Overview
Global Search
Local Search
Register Databases, Hosts, Templates, Features
Remote Search of Local Databases
Remote Search of Remote Databases
Connect syb3dbserver and SYBYL
Checkpoint UNITY Searches
Access AUSPYX Through SYBYL/UNITY
Graphical Interface
Command
List of Dialogs
UNITY Menu to Command Map
UNITY Subcommand List
List of Syb3dbserver Subcommands
O/S Utilities List
(db Commands)
Database Creation
Database Administration
Components of a Tripos Database
Create a Database-The Basics
Manage the Creation Process
A Note About Configuration Files
Create from Hitlist File via O/S Utilities
Import from Different Input File Types
Translate Between File Formats
Generate Coordinates
Determine Chirality
Create Screens
Isotope Validation
Valence Handling
Normalize Aromaticity
Standardize Structures
Unique Structures
Validate Structures
Manage Database Content
Open a Database
Get a Structure using the Menubar
Manage with syb3dbserver Commands
Manage with O/S Utilities
Report Database Information
Move UNITY Databases
Rename UNITY Databases
Delete UNITY Databases
Repair UNITY Databases
Upgrade Old UNITY Databases
UNITY Security
Log Users' Database Activity
Establish User Passwords
Queries for Searches
Performing Searches
Detailed Table of Contents
Define and Manage Features/Constraints
Feature/Constraint Descriptions (SLN Manual)
2D SLNs
Manage 2D SLNs
Edit 2D SLNs
Sketch 2D SLNs
Markushes and Macros
Save Queries
Query Format for Searches
Detailed Table of Contents
2D Searches
2D Similarity Searches
Overview
Exact Match Searches
Subset Searches
3D Searches
Flexible 3D Searches
Overview
Control Performance
Filter by Data Values
Selection Sets
Regkey Lists
Search Administration
Multi-processing UNITY Searches
Specify Multiple Hosts
Perform Multiple dbsearch Processes
Control Engines, Queueing, and Searches
List Search Information
Delete Inactive Job Information
Create Unique Job Name
Hitlists and the Hitlist Manager
Reference
Hitlists
Basic Definitions
File Format
Hitlist Examples
Using the Hitlist Manager
Manipulate Hitlists Outside Hitlist Manager
Sort Hitlist
Post-process 3D/Flexible Search Hits
Save/Delete Hitlists
Translate Between File Formats
Description of Screen Files
Hitlist File Format
UNITY Error Codes
Similarity Search List of References
Diversity References
List of Examples
List of Configuration Files
List of Files in a Tripos Database
SLN Manual
Associated Tailor Variables
TAILOR SET UNITY
SPL Expression Generators
(SPL Manual)
Online Resources
Technical Support Online
Search the Knowledgebase
Download SPL Scripts
Download Software Maintenance Releases
World-Wide Support Offices
Scientific Citations
Training Courses
Copyright © 2007, Tripos, L.P. All rights reserved.
