List of SYBYL
®
Tutorials
SYBYL Core Technologies
Ligand-Based Design
Receptor-Based Design
Structural Biology & Bioinformatics
Cheminformatics
Supplemental Technologies
SYBYL Core Technologies
Quick Introduction to SYBYL
Expressions
Atom Selection
Bond Selection
Substructure Selection
Small Molecule Sketching
Ring Fusion
Database
Molecular Spreadsheet
Become Familiar with a Molecular Spreadsheet
Importing and Graphing Data
Force Field Calculations
Minimize
Annealing
Introduction to Dynamics
Advanced Dynamics
Add Parameters and Atom Types
Tailor
Tailor
Graphics Tools and Techniques
Toolbox Icons
Annotation Palette
Capture Image at High Resolution
Capture Image at Low (Screen) Resolution
Volume Manipulation
Converting Grid Data (ISOSURFACE)
MOLCAD
Get Started with MOLCAD
Ribbon Surfaces
Cone and Field Line Surfaces
Channel Surfaces
Separating Surfaces in MOLCAD
Multiple Properties and 2D Texture Mapping
Compare Surfaces and Property Picking
MOLCAD Batch Tutorials
Compare Surface Creation Speed and Size
Improve Performance for Large Molecules
MOLCAD Plus
Create Contour Files
Interactive Iso Surfaces
Slicing Surfaces
3D Volume
Interactive Distance Surface
Separating Surfaces in MOLCAD Plus
Interactive Cones
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Ligand-Based Design
Pharmacophore Perception
and Molecular Alignment
GALAHAD
Creating a New Set of GALAHAD Models
Examining the Results from a GALAHAD Run
Examining the PMA Spreadsheet
Align Individually to a Template
Tuplets
Tuplets Tutorial
GASP
GASP Tutorial
DISCOtech
Pharmacophore Model
Similarity Suite
Surflex-Sim Tutorial
Topomer Search Virtual Screening Tutorial
Topomer Scaffold SearchingTutorial
FlexS Tutorial
SAR and ADME
QSAR
QSAR Modeling via the MSS
Principal Components Analysis
Hierarchical Clustering
Clustering Methods
CoMFA Using Steroids
CoMFA Using Ryanoids
CoMSIA
Conformer Columns
EVA
CPSA Descriptors
Topomer CoMFA
Topomer CoMFA
SAMPLS and Advanced CoMFA
Database Alignment and Field Classes
Hierarchical Analysis
SAMPLS
Region Focusing
Optimizing QSAR
Progressive Scrambling
HQSAR
HQSAR Models and Predictions
VolSurf
Required Preparation Step
VolSurf in a Set of Passively Absorbed Drugs
VolSurf in Combinatorial Chemistry
HSA Protein Binding
Almond
Required Preparation Step
Almond Quick Start
Analysis of butyrophenones with serotoninergic affinities
Distill
Single Run Mode
Hierarchy Viewer
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Receptor-Based Design
Docking
Docking Suite
Surlfex-Dock
Single Molecule Docking with FlexX
Multiple Molecule Docking with FlexX
Docking with FlexX-Pharm Constraints
Docking with FlexE
CombiFlexX
Prepare to Dock a Combinatorial Library
OptiDock
FlexXc
CombiFlexX and CScore
CScore
CScore with FlexX
CScore with CombiFlexX
CSCORE with Externally-generated Results
de novo Design
RACHEL
RACHEL
Scaffold Replacement Using CHARLIE
Bridge Generation Using CHARLIE
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Library Design
Library Creation
Legion
Reaction Scheme Entry
Legion Product-Only Combinatorials
Retrieve and Enumerate a CSLN
Molecular Diversity
Selector
Dissimilarity- and Cluster-based Selection
Matching to a Common Core
Staged Clustering
Reagent Selection
DiverseSolutions
Find New Leads Using Known Active Compounds
Look for Leads in a Combinatorial Library
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Structural Biology & Bioinformatics
Biopolymer Modeling
Biopolymer
Protein Preparation
Peptide Building
Biopolymer Displays
Manipulating Sets
Protein Loop Search
Monomer Definition
Anneal: Minimize a Subset
ProTable
ProTable Usage
SiteID
Using SiteID & UNITY Surface Volume Constraint
SiteID Examine Properties
SiteID and FlexX
Advanced Protein Modeling
ORCHESTRAR
ORCHESTRAR Project Manager Tutorial
FUGUE
FUGUE Tutorial
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Cheminformatics
Data Mining
UNITY Database Searching
Basic 2D Searching
Define a UNITY Query for Different Searches
Receptor Site Search
Spatial and Partial Match Constraints
Use SiteID and the UNITY Surface Volume Constraint
Speed up UNITY 3D/Flexible Searches
Post-Process UNITY Hits
Markushes/Macros
Qualified Atoms and List Markushes
Bond Path Constraints
UNITY Database Administration
Database Building Examples
Structure Representation
Conformational Analysis
Systematic Search
Conformational Comparison
Distance Map
Grid Search
Random Search
GA Conformational Search
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Supplemental Technologies
Quantum Tools
MOPAC
Single Molecule AMPAC Calculation
AMPAC Calculations on a Spreadsheet
Generalized Surfaces
Generalized Surfaces
Crystallography Tools
Crysin Tutorial
Tripos Tools
Tailor
Tailor
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