SLN Manual
General Information
SLN Index
Introduction
What's New
View or Print this Manual
Revised for SYBYL 8.0 (Late 2007)
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D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
Atoms
Bonds
Specify Atoms
General Format
Rules for Naming/Labeling
Atom Attributes
Boolean Operators for Expressions
Classes of Atoms
"Any" Atoms
Attachment Atoms
Elemental Atoms
Lone Pair Atoms
Macro Atoms
Markush Atoms
Rx Atoms
R/X Groups
Specify Bonds
Bond Types
Branches
Ring Closures
Bond Attributes
Complex Bond Attribute Expressions
Specify Chirality/Stereochemistry
Absolute
Relative Stereochemistry and Mixtures
Structures
2D and 3D Queries
Specify Structure (CT) Attributes
Coordinates
Re-orderable Attributes
Valued Attributes
Boolean Attributes
Structures and Mixtures
(cSLNs)
Specify Reactions
Steps to Define a 3D Query
2D SLN Patterns
Partial Match Directives
Features
Constraints
Basic Features
Centroid
Extension
Fragment
Line
Normal
Plane
Tetrahedral
OR Feature
Ligand/Receptor Interaction Features
Acceptor Atom
Acceptor Site
Aromatic Area
Donor Atom
Donor Site
Hydrophobic Areas
Negative Center
Positive N
Steric Feature
Receptor-Based Features
Protein Acceptor Atom
Protein Donor Atom
Protein Negative Center
Protein Positive N
Macros
Macros for H-bonding Features
Normal Constraints
Angle
Dihedral
Distance
2 Lines/Planes Angle
Spatial Constraints
Spatial Cap
Spatial Line
Spatial Plane
Spatial Point
Torus
Volume Constraints
Containing Volume
Excluded Volume
Receptor Cavity
Receptor Site
Surface
Bond Path Constraints
Translate Between SLN and MDL Molfiles
Reference
Overview of the MTS (MDL Translation Service)
MTS Preference Settings
Stereochemistry Marking Preferences
MDL Features Supported during Translation
Rgroup Translation Differences Paper
List of SLN Formats
Lists of Attributes
List of Examples
Markush Definitions
SLN 3D Macros
(sln3d_macros.def File)
Atomic Weights
Associated Tailor Variables
TAILOR SET UNITY
SPL Expression Generators
(SPL Manual)
Online Resources
Technical Support Online
Search the Knowledgebase
Download SPL Scripts
Download Software Maintenance Releases
World-Wide Support Offices
Scientific Citations
Training Courses
Copyright © 2007, Tripos, L.P. All rights reserved.
