Use this form to upload a chromatogram file and a file contains the genotype sequences

The program needs two files: The program searches every sequences in the first file against the chromatogram file to find the best match: both matching errors and query's length are considered in the final ranking.

Format for genotype file: on each line

 <name> <sequence> (seperated by a tab).
IUPAC nucleotide codes should be used for the ambiguous bases in the sequences.
Example:

g1 GAGAGGAAGGAAAGRRAGGAAGGAARGRARGRARGRARGRARGRARGRARGRAAGAAWGRARGRARGRARRRARKRARGGARGGARGRAAKSARRSSWKKKM
g2 GAGAGGAAGGAAAGRRAGGAAGGAARGRARGRARGRARRRARGRARGRARGRAAGAAWGRARGRARGRARRRARKRARGGARGGARGRAAKSARRSSWKKKM

Enter genotype filename, or click on the browse button to choose one:

Enter chromatogram filename, or click on the browse button to choose one:

Number of top hits [default=10]

Number of errors to fail the sequence [default=10]




Yong Kong, PhD
Yale University
333 Cedar Street, New Haven, CT 06510
Email me if you have any questions.

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